{ "paper_id": "000b7d1517ceebb34e1e3e817695b6de03e2fa78", "metadata": { "title": "Supplementary Information An eco-epidemiological study of Morbilli-related paramyxovirus infection in Madagascar bats reveals host-switching as the dominant macro-evolutionary mechanism", "authors": [ { "first": "Julien", "middle": [], "last": "M\u00e9lade", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "" }, { "first": "Nicolas", "middle": [ "Wieseke" ], "last": "4#", "suffix": "", "affiliation": { "laboratory": "", "institution": "University of Leipzig", "location": { "addrLine": "Augustusplatz 10", "postCode": "D-04109", "settlement": "Leipzig", "country": "Germany" } }, "email": "" }, { "first": "Beza", "middle": [], "last": "Ramazindrazana", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "" }, { "first": "Olivier", "middle": [], "last": "Flores", "suffix": "", "affiliation": { "laboratory": "UMR C53 CIRAD, Peuplements V\u00e9g\u00e9taux et Bioagresseurs en Milieu Tropical", "institution": "", "location": { "addrLine": "7 chemin de l'IRAT", "postCode": "97410", "settlement": "St Pierre", "country": "France" } }, "email": "" }, { "first": "$", "middle": [], "last": "", "suffix": "", "affiliation": {}, "email": "" }, { "first": "Erwan", "middle": [], "last": "Lagadec", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "" }, { "first": "Yann", "middle": [], "last": "Gomard", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "" }, { "first": "Steven", "middle": [ "M" ], "last": "Goodman", "suffix": "", "affiliation": {}, "email": "" }, { "first": "Koussay", "middle": [], "last": "Dellagi", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "" }, { "first": "Herv\u00e9", "middle": [], "last": "Pascalis", "suffix": "", "affiliation": { "laboratory": "Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Oc\u00e9an Indien (CRVOI), Plateforme de Recherche CYROI", "institution": "", "location": { "addrLine": "2 rue Maxime Rivi\u00e8re, 97490 Sainte Clotilde, La R\u00e9union", "country": "France" } }, "email": "herve.pascalis@ird.fr." } ] }, "abstract": [], "body_text": [ { "text": "- Figure S1 : Phylogeny of all sequences belonging to the UMRV phylogroup. - Table S4 : Bats cytochrome b sequences data set. -Table S5 : Test of host-parasite co-evolution using global fit methods ParaFit. Figure S1 . Phylogeny of all sequences belonging to the UMRV phylogroup. A global phylogeny of 308 partial L-gene sequences calculated in 10,000,000 iterations in MrBayes with the GTR + G + I evolutionary model and a 10% burn-in rooted with an Aquaparamyxovirus sequence (GenBank number EF646380). All Malagasy bat paramyxoviruses sequences obtained within this study fell within group of Unclassified Morbillivirus-Related viruses. Genbank accession numbers used for each virus genera are indicated in Table S6 . ", "cite_spans": [], "ref_spans": [ { "start": 2, "end": 11, "text": "Figure S1", "ref_id": null }, { "start": 77, "end": 85, "text": "Table S4", "ref_id": null }, { "start": 126, "end": 135, "text": "-Table S5", "ref_id": null }, { "start": 207, "end": 216, "text": "Figure S1", "ref_id": null }, { "start": 710, "end": 718, "text": "Table S6", "ref_id": null } ], "section": "" } ], "bib_entries": { "BIBREF32": { "ref_id": "b32", "title": "NDV/HQ266603/Chicken/1992", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF43": { "ref_id": "b43", "title": "MuV/FJ375177/Human/1987", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF48": { "ref_id": "b48", "title": "HeV/HM044321/Horse/2007", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF72": { "ref_id": "b72", "title": "NDV/FJ751918/Chicken/1979", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF87": { "ref_id": "b87", "title": "APMV4/EU877976/Duck/2006", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF123": { "ref_id": "b123", "title": "NiV/FJ513078/Homo_sapiens/2007", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF127": { "ref_id": "b127", "title": "MuV/AF280799/Monkey/1996", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF151": { "ref_id": "b151", "title": "CDV/KF914669/Dog/2013", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF153": { "ref_id": "b153", "title": "APMV2/HM159993/Chicken/2006", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF158": { "ref_id": "b158", "title": "Salem_virus/JQ697837/Horse/1992", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF163": { "ref_id": "b163", "title": "APMV2/EU338414/Chicken/1956", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF170": { "ref_id": "b170", "title": "APMV8/FJ215863/Goose/1976", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF218": { "ref_id": "b218", "title": "HeV/HM044319/Horse/2007", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} }, "BIBREF223": { "ref_id": "b223", "title": "MeV/GQ376026/Human/1999", "authors": [], "year": null, "venue": "", "volume": "", "issn": "", "pages": "", "other_ids": {} } }, "ref_entries": { "TABREF0": { "text": "Table S4. Bats cytochrome b sequences data set. Sequence generated as part of this study is underlined. Miniopterus gleni; N\u00b0 10: Miniopterus sororculus; N\u00b0 11: Miniopterus mahafaliensis; N\u00b0 12: Miniopterus manavi; N\u00b0 13: Miniopterus griveaudi.", "latex": null, "type": "table" } }, "back_matter": [] }